![]() Fixed an issue where right-clicking on a graph in a report and choosing to show "Report", "History" or "Element Info" triggered an error.Fixed an issue where it took a long time to open a workbench it it was previouslyclosed when displaying an open table editor that had been sorted.Fixed an issue with the Import Metadata tool where, if a spreadsheet had already been loaded, then selecting the same spreadsheet again did not reload the spreadsheet content.Fixed a bug in the "Manage Enzymes" wizard that prevented a user from cancelling the action if "Save as new enzyme list" was enabled.Fixed a rare issue where some annotations could, but did not necessarily, go missing on sequences with greater than 1000 annotations of a given type on that sequence before the deletion and where the right-click context menu option "Delete selection" was used.Read group details are now shown on the Element Info view of sequence lists.GenBank import now also allows for file names with 'GBFF' extension. The CLC Sequence Viewer is developed for Windows, macOS and Linux. ![]() New placeholders are available when defining the names of exporter outputs.The "Sort folder" tool now uses numerical sorting for filenames prefixed with a number.The option "is not in list" has been introduced as a new table filtering option.The Quick Launch tool is now found under the Toolbox menu instead of the View menu and a button called Launch that brings up this tool has been added to the toolbar.The list of enzymes pre-installed in the workbench has been updated from REBASE.(NCBI will be moving all web services to the HTTPS protocol on September 30, 2016). All NCBI server communication is now encrypted.However, type the name of a bacterial group (Burkholderiaceae) and you will be happy. At first you get the Journal Research and there seems to be nothing else. National Center for Biotechnology Information ĬyanoDB A Database of Cyanobacterial genera A comprehensive database of bacterial sRNA targets verified by experiments sRNATarBase įortunately several groups of researchers are investigating this and other cool things about sRNAs (for example the Polacek group) This is another one but for gram-positive bacteria only. sRNAdb: A small non-coding RNA database for gram-positive bacteria For myself: this is the BEST for RDP projectĤ. Bacterial small regulatory RNA database The website is not functional so in case you need it here is the paper. Very useful and functional (April 27, 2016)ģ. This website is very useful because it contains links to other RNA databases If you set the flip parameter to true mothur will try aligning the reverse compliment as well." "Some of you sequences generated alignments that eliminated too many bases, a list is provided in. Cuauhtemoc Licona, I noticed (for the first time) the following message from Mothur after aligning with qs: This tool made me think a lot, it converts a DNA sequence into its reverse, complement, or reverse-complement counterpart. MetaCoMET: a web platform for discovery and visualization of the core microbiome.ĬOREMIC: a web-tool to search for a niche associated CORE MICrobiome. Very interesting and informative map of cases of melioidosis worldwide MicrobeWiki Amazing collection of very cool things about microbes OMIA Online Mendelian Inheritance in Animals PanFP: pangenome-based functional profiles for microbial communities Introducing SONS, a Tool for Operational Taxonomic Unit-Based Comparisons of Microbial Community Memberships and Structures. IMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis ( paper) UMAP (Uniform Manifold Approximation and Projection for Dimension Reduction) Reference.įLASH: fast length adjustment of short reads to improve genome assemblies MPUMA microbial Profiling Using Metagenomic Assembly MetaPhlAn 2: Metagenomic Phylogenetic Analysis ANCHOR: A 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples.Ĭalour: an Interactive, Microbe-Centric Analysis Tool.
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